PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0146s0200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 188aa    MW: 20444.9 Da    PI: 9.0567
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0146s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.12.5e-2146567128
                     NAM  67 kyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             ++a+g r+nr+t+sgyWkatg+ + v+s++++++gl kt+vfy g+ap+g+kt+W m+eyr+
  SapurV1A.0146s0200.1.p   4 REARGGRPNRSTASGYWKATGSPRYVYSSDNQVIGLMKTMVFYMGKAPSGRKTKWKMNEYRA 65 
                             567899******************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100526.798191IPR003441NAC domain
SuperFamilySSF1019419.94E-24490IPR003441NAC domain
PfamPF023655.8E-9964IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MQAREARGGR PNRSTASGYW KATGSPRYVY SSDNQVIGLM KTMVFYMGKA PSGRKTKWKM  60
NEYRAIGAHG LSRNATPKLR HEFSLCRVYV VSGSFRAFDR RPLGAVAGET QHPLGVPHAG  120
DAATTSAQNL MIVEMTSSPE TSYSGEDHVD NPGTAAGASW GLLDGLEPPE WEWPEQLHCP  180
GTDRFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-1888986163NO APICAL MERISTEM PROTEIN
1ut4_B2e-1888986163NO APICAL MERISTEM PROTEIN
1ut7_A2e-1888986163NO APICAL MERISTEM PROTEIN
1ut7_B2e-1888986163NO APICAL MERISTEM PROTEIN
3swm_A2e-1888989166NAC domain-containing protein 19
3swm_B2e-1888989166NAC domain-containing protein 19
3swm_C2e-1888989166NAC domain-containing protein 19
3swm_D2e-1888989166NAC domain-containing protein 19
3swp_A2e-1888989166NAC domain-containing protein 19
3swp_B2e-1888989166NAC domain-containing protein 19
3swp_C2e-1888989166NAC domain-containing protein 19
3swp_D2e-1888989166NAC domain-containing protein 19
4dul_A2e-1888986163NAC domain-containing protein 19
4dul_B2e-1888986163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298277.23e-90NAC domain-containing protein 90
SwissprotQ9FMR32e-52NAC90_ARATH; NAC domain-containing protein 90
TrEMBLB9GI043e-90B9GI04_POPTR; NAC domain-containing protein 90
STRINGPOPTR_0001s22630.18e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.23e-53NAC domain containing protein 61